Package: scGOclust Type: Package Title: Measuring Cell Type Similarity with Gene Ontology in Single-Cell RNA-Seq Version: 0.2.1 Authors@R: c(person(given = "Yuyao", family = "Song", email = "ysong@ebi.ac.uk", role = c("aut", "cre", "ctb")), person(given = "Irene", family = "Papatheodorou", email = "irenep@ebi.ac.uk", role = c("aut", "ths"))) Description: Traditional methods for analyzing single cell RNA-seq datasets focus solely on gene expression, but this package introduces a novel approach that goes beyond this limitation. Using Gene Ontology terms as features, the package allows for the functional profile of cell populations, and comparison within and between datasets from the same or different species. Our approach enables the discovery of previously unrecognized functional similarities and differences between cell types and has demonstrated success in identifying cell types' functional correspondence even between evolutionarily distant species. URL: https://github.com/Papatheodorou-Group/scGOclust BugReports: https://github.com/Papatheodorou-Group/scGOclust/issues License: GPL (>= 3) Encoding: UTF-8 LazyData: true LazyDataCompression: bzip2 RoxygenNote: 7.2.3 Imports: limma, Seurat(>= 5.0.0), biomaRt, dplyr, magrittr, stats, tibble, tidyr, Matrix, utils, networkD3, slanter Suggests: knitr, devtools, pheatmap, rmarkdown, httr VignetteBuilder: knitr Depends: R (>= 2.10) Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev Repository: https://papatheodorou-group.r-universe.dev Date/Publication: 2025-05-06 12:47:34 UTC RemoteUrl: https://github.com/papatheodorou-group/scgoclust RemoteRef: HEAD RemoteSha: af79a6085a7302ff368fc3df0e37eb51daa24852 NeedsCompilation: no Packaged: 2026-07-03 06:43:27 UTC; root Author: Yuyao Song [aut, cre, ctb], Irene Papatheodorou [aut, ths] Maintainer: Yuyao Song