{ "_id": "6a1fead3b401979e73440024", "Package": "scGOclust", "Type": "Package", "Title": "Measuring Cell Type Similarity with Gene Ontology in Single-Cell\nRNA-Seq", "Version": "0.2.1", "Authors@R": "c(person(given = \"Yuyao\", family = \"Song\", email = \"ysong@ebi.ac.uk\", role = c(\"aut\", \"cre\", \"ctb\")), person(given = \"Irene\", family = \"Papatheodorou\", email = \"irenep@ebi.ac.uk\", role = c(\"aut\", \"ths\")))", "Description": "Traditional methods for analyzing single cell RNA-seq\ndatasets focus solely on gene expression, but this package\nintroduces a novel approach that goes beyond this limitation.\nUsing Gene Ontology terms as features, the package allows for\nthe functional profile of cell populations, and comparison\nwithin and between datasets from the same or different species.\nOur approach enables the discovery of previously unrecognized\nfunctional similarities and differences between cell types and\nhas demonstrated success in identifying cell types' functional\ncorrespondence even between evolutionarily distant species.", "URL": "https://github.com/Papatheodorou-Group/scGOclust", "BugReports": "https://github.com/Papatheodorou-Group/scGOclust/issues", "License": "GPL (>= 3)", "Encoding": "UTF-8", "LazyData": "true", "LazyDataCompression": "bzip2", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev", "Repository": "https://papatheodorou-group.r-universe.dev", "Date/Publication": "2025-05-06 12:47:34 UTC", "RemoteUrl": "https://github.com/papatheodorou-group/scgoclust", "RemoteRef": "HEAD", "RemoteSha": "af79a6085a7302ff368fc3df0e37eb51daa24852", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-03 08:39:04 UTC", "User": "root" }, "Author": "Yuyao Song [aut, cre, ctb],\nIrene Papatheodorou [aut, ths]", "Maintainer": "Yuyao Song ", "MD5sum": "f51b7874b2b9438951ee5e03a561198c", "_user": "papatheodorou-group", "_type": "src", "_file": "scGOclust_0.2.1.tar.gz", "_fileid": "897d6cde1a740fb49b08e863959fe8d42bf7575ae69dc05666cc041d7ef76c31", "_filesize": 4531351, "_sha256": "897d6cde1a740fb49b08e863959fe8d42bf7575ae69dc05666cc041d7ef76c31", "_created": "2026-06-03T08:39:04.000Z", "_published": "2026-06-03T08:50:27.938Z", "_distro": "noble", "_jobs": [ { "job": 79254869075, "time": 388, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7379826699" }, { "job": 79254868983, "time": 327, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7379805181" }, { "job": 79254869065, "time": 360, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7379888555" }, { "job": 79254869083, "time": 265, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7379854229" }, { "job": 79253866520, "time": 358, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7379693290" }, { "job": 79254869051, 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"ysong@ebi.ac.uk", "login": "yy-song0718", "description": "PhD student at EMBL-EBI, Computational genomics / Bioinformatics / Single Cell Transcriptomics", "uuid": 48168412 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "limma", "role": "Imports" }, { "package": "Seurat", "version": ">= 5.0.0", "role": "Imports" }, { "package": "biomaRt", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "networkD3", "role": "Imports" }, { "package": "slanter", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "pheatmap", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "httr", "role": "Suggests" } ], "_owner": "papatheodorou-group", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 10, "_contributors": [ { "user": "yy-song0718", "count": 95, "uuid": 48168412 } ], "_userbio": { "uuid": 147833604, "type": "organization", "name": "Papatheodorou Group", "description": "Decoding phenotypes using single cell genomics " }, "_downloads": { "count": 195, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/scGOclust" }, "_devurl": "https://github.com/papatheodorou-group/scgoclust", "_searchresults": 18, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/scGOclust.html", "manual.pdf" ], "_homeurl": "https://github.com/papatheodorou-group/scgoclust", "_realowner": "papatheodorou-group", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": 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